Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening
Identifieur interne : 007C27 ( Main/Exploration ); précédent : 007C26; suivant : 007C28Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening
Auteurs : Barbara D'Haene [Belgique] ; Catia Attanasio [Suisse] ; Diane Beysen [Belgique] ; Josée Dostie [États-Unis] ; Edmond Lemire [Canada] ; Philippe Bouchard [France] ; Michael Field [Australie] ; Kristie Jones [Australie] ; Birgit Lorenz [Allemagne] ; Björn Menten [Belgique] ; Karen Buysse [Belgique] ; Filip Pattyn [Belgique] ; Marc Friedli [Suisse] ; Catherine Ucla [Suisse] ; Colette Rossier [Suisse] ; Carine Wyss [Suisse] ; Frank Speleman [Belgique] ; Anne De Paepe [Belgique] ; Job Dekker [États-Unis] ; Stylianos E. Antonarakis [Suisse] ; Elfride De Baere [Belgique]Source :
- PLoS Genetics [ 1553-7390 ] ; 2009.
Abstract
To date, the contribution of disrupted potentially
Url:
DOI: 10.1371/journal.pgen.1000522
PubMed: 19543368
PubMed Central: 2689649
Affiliations:
- Allemagne, Australie, Belgique, Canada, France, Suisse, États-Unis
- Massachusetts, Nouvelle-Galles du Sud, Île-de-France
- Paris, Sydney
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 002871
- to stream Pmc, to step Curation: 002721
- to stream Pmc, to step Checkpoint: 002823
- to stream Ncbi, to step Merge: 000603
- to stream Ncbi, to step Curation: 000603
- to stream Ncbi, to step Checkpoint: 000603
- to stream Main, to step Merge: 008303
- to stream Main, to step Curation: 007C27
Le document en format XML
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-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the <italic>FOXL2</italic>
Promotor: Implications for Mutation Screening</title>
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<author><name sortKey="Antonarakis, Stylianos E" sort="Antonarakis, Stylianos E" uniqKey="Antonarakis S" first="Stylianos E." last="Antonarakis">Stylianos E. Antonarakis</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Disease-Causing 7.4 kb <italic>Cis</italic>
-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the <italic>FOXL2</italic>
Promotor: Implications for Mutation Screening</title>
<author><name sortKey="D Haene, Barbara" sort="D Haene, Barbara" uniqKey="D Haene B" first="Barbara" last="D'Haene">Barbara D'Haene</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium</addr-line>
</nlm:aff>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Center for Medical Genetics, Ghent University Hospital, Ghent</wicri:regionArea>
<wicri:noRegion>Ghent</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Attanasio, Catia" sort="Attanasio, Catia" uniqKey="Attanasio C" first="Catia" last="Attanasio">Catia Attanasio</name>
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</nlm:aff>
<country xml:lang="fr">Suisse</country>
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<wicri:noRegion>Geneva</wicri:noRegion>
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</author>
<author><name sortKey="Beysen, Diane" sort="Beysen, Diane" uniqKey="Beysen D" first="Diane" last="Beysen">Diane Beysen</name>
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<author><name sortKey="Dostie, Josee" sort="Dostie, Josee" uniqKey="Dostie J" first="Josée" last="Dostie">Josée Dostie</name>
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<author><name sortKey="Lemire, Edmond" sort="Lemire, Edmond" uniqKey="Lemire E" first="Edmond" last="Lemire">Edmond Lemire</name>
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<author><name sortKey="Bouchard, Philippe" sort="Bouchard, Philippe" uniqKey="Bouchard P" first="Philippe" last="Bouchard">Philippe Bouchard</name>
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</nlm:aff>
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<author><name sortKey="Field, Michael" sort="Field, Michael" uniqKey="Field M" first="Michael" last="Field">Michael Field</name>
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<author><name sortKey="Jones, Kristie" sort="Jones, Kristie" uniqKey="Jones K" first="Kristie" last="Jones">Kristie Jones</name>
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</nlm:aff>
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<author><name sortKey="Lorenz, Birgit" sort="Lorenz, Birgit" uniqKey="Lorenz B" first="Birgit" last="Lorenz">Birgit Lorenz</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Department of Ophthalmology, Justus-Liebig-University Giessen, Universitaetsklinikum Giessen und Marburg GmbH Giessen Campus, Giessen, Germany</addr-line>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Menten, Bjorn" sort="Menten, Bjorn" uniqKey="Menten B" first="Björn" last="Menten">Björn Menten</name>
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</nlm:aff>
<country xml:lang="fr">Belgique</country>
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<author><name sortKey="Buysse, Karen" sort="Buysse, Karen" uniqKey="Buysse K" first="Karen" last="Buysse">Karen Buysse</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium</addr-line>
</nlm:aff>
<country xml:lang="fr">Belgique</country>
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<wicri:noRegion>Ghent</wicri:noRegion>
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</author>
<author><name sortKey="Pattyn, Filip" sort="Pattyn, Filip" uniqKey="Pattyn F" first="Filip" last="Pattyn">Filip Pattyn</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium</addr-line>
</nlm:aff>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Center for Medical Genetics, Ghent University Hospital, Ghent</wicri:regionArea>
<wicri:noRegion>Ghent</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Friedli, Marc" sort="Friedli, Marc" uniqKey="Friedli M" first="Marc" last="Friedli">Marc Friedli</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland</addr-line>
</nlm:aff>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva</wicri:regionArea>
<wicri:noRegion>Geneva</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ucla, Catherine" sort="Ucla, Catherine" uniqKey="Ucla C" first="Catherine" last="Ucla">Catherine Ucla</name>
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</nlm:aff>
<country xml:lang="fr">Suisse</country>
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<wicri:noRegion>Geneva</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rossier, Colette" sort="Rossier, Colette" uniqKey="Rossier C" first="Colette" last="Rossier">Colette Rossier</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland</addr-line>
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</affiliation>
</author>
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<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva</wicri:regionArea>
<wicri:noRegion>Geneva</wicri:noRegion>
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<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Center for Medical Genetics, Ghent University Hospital, Ghent</wicri:regionArea>
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<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Center for Medical Genetics, Ghent University Hospital, Ghent</wicri:regionArea>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Program in Gene Function and Expression and Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts</wicri:regionArea>
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<author><name sortKey="Antonarakis, Stylianos E" sort="Antonarakis, Stylianos E" uniqKey="Antonarakis S" first="Stylianos E." last="Antonarakis">Stylianos E. Antonarakis</name>
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<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva</wicri:regionArea>
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<author><name sortKey="De Baere, Elfride" sort="De Baere, Elfride" uniqKey="De Baere E" first="Elfride" last="De Baere">Elfride De Baere</name>
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<country xml:lang="fr">Belgique</country>
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<series><title level="j">PLoS Genetics</title>
<idno type="ISSN">1553-7390</idno>
<idno type="eISSN">1553-7404</idno>
<imprint><date when="2009">2009</date>
</imprint>
</series>
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<profileDesc><textClass></textClass>
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<front><div type="abstract" xml:lang="en"><p>To date, the contribution of disrupted potentially <italic>cis</italic>
-regulatory conserved non-coding sequences (CNCs) to human disease is most likely underestimated, as no systematic screens for putative deleterious variations in CNCs have been conducted. As a model for monogenic disease we studied the involvement of genetic changes of CNCs in the <italic>cis</italic>
-regulatory domain of <italic>FOXL2</italic>
in blepharophimosis syndrome (BPES). Fifty-seven molecularly unsolved BPES patients underwent high-resolution copy number screening and targeted sequencing of CNCs. Apart from three larger distant deletions, a <italic>de novo</italic>
deletion as small as 7.4 kb was found at 283 kb 5′ to <italic>FOXL2</italic>
. The deletion appeared to be triggered by an H-DNA-induced double-stranded break (DSB). In addition, it disrupts a novel long non-coding RNA (ncRNA) <italic>PISRT1</italic>
and 8 CNCs. The regulatory potential of the deleted CNCs was substantiated by <italic>in vitro</italic>
luciferase assays. Interestingly, Chromosome Conformation Capture (3C) of a 625 kb region surrounding <italic>FOXL2</italic>
in expressing cellular systems revealed physical interactions of three upstream fragments and the <italic>FOXL2</italic>
core promoter. Importantly, one of these contains the 7.4 kb deleted fragment. Overall, this study revealed the smallest distant deletion causing monogenic disease and impacts upon the concept of mutation screening in human disease and developmental disorders in particular.</p>
</div>
</front>
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<li>Nouvelle-Galles du Sud</li>
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<country name="Canada"><noRegion><name sortKey="Lemire, Edmond" sort="Lemire, Edmond" uniqKey="Lemire E" first="Edmond" last="Lemire">Edmond Lemire</name>
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